PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G016300.1
Common NamePHAVU_010G016300g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 308aa    MW: 34290.2 Da    PI: 7.0256
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G016300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000225375123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ C + F++   L  H+++H
  Phvul.010G016300.1 53 YSCSFCRREFRSAQALGGHMNVH 75
                        99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.58E-65079No hitNo description
PROSITE profilePS5015711.2195380IPR007087Zinc finger, C2H2
SMARTSM003550.00985375IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805575IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MEQGQCWTKR KYSLSSSLSS PANPSYGDSW EEQAFAEDAA NSLGGCVWPP RSYSCSFCRR  60
EFRSAQALGG HMNVHRRDRA RLKQQPSSPH NEILCHDLQT QLHKPLQSPF ASLDDYLYPS  120
PVCGLAYKKT KPNSYPDFVA SPSSPSHSKA LLAPSLNSGN SREETMIPFY DSTILHKISP  180
VSNSSETWPN LAEDQGLYSC KFHPQADTKK PSKGIIDSRC WGSDDIDGDM SLNSVVYSTH  240
PFLQFESTKE ADHMSCMKRK TDASSSPFSP KSSSVDRNDV QPKMLEFSPS SLEELDLELR  300
LGYRSKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A8e-134875229superman protein
2l1o_A8e-134875229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007134063.10.0hypothetical protein PHAVU_010G016300g
TrEMBLV7AKE90.0V7AKE9_PHAVU; Uncharacterized protein
STRINGGLYMA01G24820.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.11e-26zinc-finger protein 10